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std.fs.Dir: fix updateFile() to flush the file before updating its times

AtomicFile.finish() calls flush() which renders any previous updateTimes() calls
useless. Regression introduced in f2a3ac7c0534a74ee544fdf6ef9d2176a8d62389.

Closes #24927.
98585af51dAlex Rønne Petersen committed on 8/24/2025, 12:30:31 AMparent38ef3f8
1 file changedLine totals unavailable