This PR changes things so that when the user mutates their current
project (e.g. adding a folder), the thread entries now update the
currently running threads to be pointing at this new set of folders.

Self-Review Checklist:

- [x] I've reviewed my own diff for quality, security, and reliability
- [x] Unsafe blocks (if any) have justifying comments
- [x] The content is consistent with the [UI/UX
checklist](https://github.com/zed-industries/zed/blob/main/CONTRIBUTING.md#uiux-checklist)
- [x] Tests cover the new/changed behavior
- [x] Performance impact has been considered and is acceptable

TODO:
- [x] Manually test this case

Release Notes:

- N/A